vcf annotation with ANNOVAR
vcf.annovar.annotation( my_raw_vcf, path_results = "MORFEE_results", path_to_annovar = NA, path_annovar_db = "DB_annovar" )
| my_raw_vcf | a string to define name of raw VCF to annotate |
|---|---|
| path_results | a path where the annoated VCF will be saved |
| path_to_annovar | define path to ANNOVAR binaries |
| path_annovar_db | a path where the database will be stored |